Father Charles Sullivan was punished for his drunkenness, his whore-mongering and for threatening to shoot the Bishop. And he died alone, in disgrace, abandoned by the church.

Episode Two begins with an apocalyptic Catholic doomsday cult with odd sexual practices. Meanwhile, the suspected murderer priest continues to molest altar boys. 

How could men like Richard Lavigne, Father X and Charles Sullivan, plus dozens of other Springfield priests, get away with such evil criminal behavior? When the person in charge of a group is depraved, then, usually, the whole damn organization is rotten.